Upload CSVs
Import scaled FlowJo exports with the standard SampleID_Group.csv naming convention.
CAFE
Analyze spectral flow cytometry data and produce publication-ready figures without writing code.
What CAFE does
Section titled “What CAFE does”Clean & Correct
Run MAD-based QC, optional PCA, and ComBat batch correction in a guided pipeline.
Cluster & Explore
Compute UMAP + Leiden clusters, then pan, zoom, and select cells interactively.
Export Figures
Download 300 DPI PNG/PDF/SVG plots plus a ZIP of tables and the processed AnnData object.